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RCSB PDB - 3IAR: The crystal structure of human adenosine deaminase
3IAR | pdb_00003iar The crystal structure of human adenosine deaminase
- Classification: HYDROLASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-07-14 Released: 2009-08-11
- Deposition Author(s): Ugochukwu, E., Zhang, Y., Hapka, E., Yue, W.W., Bray, J.E., Muniz, J., Burgess-Brown, N., Chaikuad, A., von Delft, F., Bountra, C., Arrowsmith, C.H., Weigelt, J., Edwards, A., Kavanagh, K.L., Oppermann, U., Structural Genomics Consortium (SGC)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.52 Å
- R-Value Free:
0.185 (Depositor), 0.140 (DCC)
- R-Value Work:
0.153 (Depositor), 0.140 (DCC)
- R-Value Observed:
0.154 (Depositor)
Starting Model: experimental
View more details
This is version 1.2 of the entry. See complete
history
.
The crystal structure of human adenosine deaminaseUgochukwu, E.
,
Zhang, Y.
,
Hapka, E.
,
Yue, W.W.
,
Bray, J.E.
,
Muniz, J.
,
Burgess-Brown, N.
,
Chaikuad, A.
,
Kavanagh, K.L.
,
Oppermann, U.
To be published.
Macromolecule Content
- Total Structure Weight: 41.91 kDa
- Atom Count: 3,638
- Modeled Residue Count: 360
- Deposited Residue Count: 367
- Unique protein chains: 1
Find similar proteins by:
(by identity cutoff) |
3D Structure Ligands 4 Unique ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions 3D1
Query on 3D1
Download Ideal Coordinates CCD File
B [auth A] (2R,3S,5R)-5-(6-amino-9H-purin-9-yl)-tetrahydro-2-(hydroxymethyl)furan-3-ol
C10 H13 N5 O3
OLXZPDWKRNYJJZ-RRKCRQDMSA-N Interactions
Interactions & Density
GOL
Query on GOL
Download Ideal Coordinates CCD File
F [auth A] GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N Interactions
Interactions & Density
NO3
Query on NO3
Download Ideal Coordinates CCD File
D [auth A],
E [auth A] NITRATE ION
N O3
NHNBFGGVMKEFGY-UHFFFAOYSA-N Interactions
Interactions & Density
NI
Query on NI
Download Ideal Coordinates CCD File
C [auth A] NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N Interactions
Interactions & Density
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.52 Å
- R-Value Free: 0.185 (Depositor), 0.140 (DCC)
- R-Value Work: 0.153 (Depositor), 0.140 (DCC)
- R-Value Observed: 0.154 (Depositor)
Unit Cell
:
Length ( Å ) Angle ( ˚ ) a = 61.07 α = 90 b = 73.51 β = 90 c = 76.66 γ = 90 Software Package: Software Name Purpose CrystalClear data collection PHASER phasing PHENIX refinement MOSFLM data reduction SCALA data scaling
Deposition Data
- Released Date: 2009-08-11
Deposition Author(s): Ugochukwu, E., Zhang, Y., Hapka, E., Yue, W.W., Bray, J.E., Muniz, J., Burgess-Brown, N., Chaikuad, A., von Delft, F., Bountra, C., Arrowsmith, C.H., Weigelt, J., Edwards, A., Kavanagh, K.L., Oppermann, U., Structural Genomics Consortium (SGC)
Revision History (Full details and data files)
- Version 1.0: 2009-08-11
Type: Initial release
- Version 1.1: 2011-07-13
Changes: Non-polymer description, Version format compliance
- Version 1.2: 2023-09-06
Changes: Data collection, Database references, Derived calculations, Refinement description
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