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Bioconductor - cfToolsData

This is the released version of cfToolsData; for the devel version, see cfToolsData.

Bioconductor version: Release (3.21)

The cfToolsData package supplies the data for the cfTools package. It contains two pre-trained deep neural network (DNN) models for the cfSort function. Additionally, it includes the shape parameters of beta distribution characterizing methylation markers associated with four tumor types for the CancerDetector function, as well as the parameters characterizing methylation markers specific to 29 primary human tissue types for the cfDeconvolve function.

Author: Ran Hu [aut, cre] ORCID: 0000-0002-0563-8957 , Shuo Li [aut] ORCID: 0000-0002-1960-6016 , Xianghong Jasmine Zhou [aut] ORCID: 0000-0002-4522-7490 , Wenyuan Li [aut] ORCID: 0000-0002-5029-8525

Maintainer: Ran Hu <huran at ucla.edu>

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("cfToolsData")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cfToolsData")

Follow Installation instructions to use this package in your R session.

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