This is the released version of TMExplorer; for the devel version, see TMExplorer.
A Collection of Tumour Microenvironment Single-cell RNA Sequencing Datasets and Corresponding MetadataBioconductor version: Release (3.21)
This package provides a tool to search and download a collection of tumour microenvironment single-cell RNA sequencing datasets and their metadata. TMExplorer aims to act as a single point of entry for users looking to study the tumour microenvironment at the single cell level. Users can quickly search available datasets using the metadata table and then download the ones they are interested in for analysis.
Author: Erik Christensen [aut, cre], Alaine Naidas [aut], David Chen [aut], Parisa Shooshtari [aut]
Maintainer: Erik Christensen <echris3 at uwo.ca>
Citation (from within R, entercitation("TMExplorer")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TMExplorer")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TMExplorer")Follow Installation instructions to use this package in your R session.
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