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Bioconductor - STexampleData

STexampleData

This is the released version of STexampleData; for the devel version, see STexampleData.

Collection of spatial transcriptomics datasets in SpatialExperiment Bioconductor format

Bioconductor version: Release (3.21)

Collection of spatial transcriptomics datasets stored in SpatialExperiment Bioconductor format, for use in examples, demonstrations, and tutorials. The datasets are from several different platforms and have been sourced from various publicly available sources. Several datasets include images and/or reference annotation labels.

Author: Lukas M. Weber [aut, cre] ORCID: 0000-0002-3282-1730 , Yixing E. Dong [aut] ORCID: 0009-0003-5115-5686

Maintainer: Lukas M. Weber <lmweb012 at gmail.com>

Citation (from within R, enter citation("STexampleData")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("STexampleData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("STexampleData")
Details See More Suggests BiocStyle, knitr, rmarkdown, BumpyMatrix, HDF5Array Linking To Enhances Depends On Me Imports Me Suggests Me BulkSignalR, escheR, ggsc, ggspavis, nnSVG, poem, smoothclust, spatialSimGP, spoon, SpotSweeper, SVP, tpSVG Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.


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