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Bioconductor - RTCGA.CNV

RTCGA.CNV

This is the released version of RTCGA.CNV; for the devel version, see RTCGA.CNV.

CNV (Copy-number variation) datasets from The Cancer Genome Atlas Project

Bioconductor version: Release (3.21)

Package provides CNV (based on Merge snp) datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/. Data format is explained here https://wiki.nci.nih.gov/display/TCGA/Retrieving +Data+Using+the+Data+Matrix. Data from 2015-11-01 snapshot.

Author: Przemyslaw Biecek <przemyslaw.biecek at gmail.com>

Maintainer: Marcin Kosinski <m.p.kosinski at gmail.com>

Citation (from within R, enter citation("RTCGA.CNV")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RTCGA.CNV")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RTCGA.CNV")
Using RTCGA to download CNV data as included in RTCGA.CNV HTML R Script Using RTCGA to estimate ratio of MDM2 duplications HTML R Script Reference Manual PDF NEWS Text Details See More Package Archives

Follow Installation instructions to use this package in your R session.

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