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Bioconductor - GenomicDistributionsData

GenomicDistributionsData

This is the released version of GenomicDistributionsData; for the devel version, see GenomicDistributionsData.

Reference data for GenomicDistributions package

Bioconductor version: Release (3.21)

This package provides ready to use reference data for GenomicDistributions package. Raw data was obtained from ensembldb and processed with helper functions. Data files are available for the following genome assemblies: hg19, hg38, mm9 and mm10.

Author: Michal Stolarczyk [aut], Kristyna Kupkova [aut, cre], Jose Verdezoto [aut], John Lawson [ctb], Jason Smith [ctb], Nathan C. Sheffield [ctb]

Maintainer: Kristyna Kupkova <kristynakupkova at gmail.com>

Citation (from within R, enter citation("GenomicDistributionsData")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GenomicDistributionsData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GenomicDistributionsData")
Details biocViews ExperimentData, ExperimentHub, Genome Version 1.16.0 License BSD_2_clause + file LICENSE Depends R (>= 4.1) Imports ExperimentHub(>= 1.14.0), AnnotationHub, AnnotationFilter, data.table, utils, BSgenome, GenomeInfoDb, GenomicFeatures, GenomicRanges, ensembldb System Requirements URL Bug Reports http://github.com/databio/GenomicDistributionsData See More Package Archives

Follow Installation instructions to use this package in your R session.


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