This is the released version of BloodCancerMultiOmics2017; for the devel version, see BloodCancerMultiOmics2017.
"Drug-perturbation-based stratification of blood cancer" by Dietrich S, OleÅ M, Lu J et al. - experimental data and complete analysisBioconductor version: Release (3.21)
The package contains data of the Primary Blood Cancer Encyclopedia (PACE) project together with a complete executable transcript of the statistical analysis and reproduces figures presented in the paper "Drug-perturbation-based stratification of blood cancer" by Dietrich S, OleÅ M, Lu J et al., J. Clin. Invest. (2018) 128(1):427-445. doi:10.1172/JCI93801.
Author: MaÅgorzata OleÅ, Sascha Dietrich, Junyan Lu, Britta Velten, Andreas Mock, Vladislav Kim, Wolfgang Huber
Maintainer: MaÅgorzata OleÅ <dr.malgorzata.oles at gmail.com>
Citation (from within R, entercitation("BloodCancerMultiOmics2017")
): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BloodCancerMultiOmics2017")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BloodCancerMultiOmics2017")
Details biocViews CancerData, ExperimentData, LeukemiaCancerData, ReproducibleResearch Version 1.28.0 License LGPL (>= 3) Depends R (>= 3.5.0) Imports beeswarm, Biobase, DESeq2, devtools, dplyr, ggdendro, ggplot2, glmnet, graphics, grDevices, grid, gtable, ipflasso, methods, RColorBrewer, reshape2, scales, stats, SummarizedExperiment, survival, tibble System Requirements URL See More Suggests BiocStyle, knitr, rmarkdown, abind, AnnotationDbi, biomaRt, broom, colorspace, cowplot, dendsort, doParallel, foreach, forestplot, genefilter, ggbeeswarm, ggtern, gridExtra, hexbin, limma, magrittr, Matrix, maxstat, nat, org.Hs.eg.db, pheatmap, piano, readxl, Rtsne, tidyr, xtable Linking To Enhances Depends On Me Imports Me Suggests Me Links To Me Build Report Build Report Package Archives
Follow Installation instructions to use this package in your R session.
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