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Showing content from https://www.bioconductor.org/packages/release/data/annotation/html/AHPathbankDbs.html below:

Bioconductor - AHPathbankDbs

This is the released version of AHPathbankDbs; for the devel version, see AHPathbankDbs.

Bioconductor version: Release (3.21)

The package provides a comprehensive mapping table of metabolites and proteins linked to PathBank pathways. The tables include HMDB, KEGG, ChEBI, CAS, Drugbank, Uniprot IDs. The tables are provided for each of the 10 species ("Homo sapiens", "Escherichia coli", "Mus musculus", "Arabidopsis thaliana", "Saccharomyces cerevisiae", "Bos taurus", "Caenorhabditis elegans", "Rattus norvegicus", "Drosophila melanogaster", and "Pseudomonas aeruginosa"). These table information can be used for Metabolite Set (and other) Enrichment Analysis.

Author: Kozo Nishida [aut, cre] ORCID: 0000-0001-8501-7319

Maintainer: Kozo Nishida <kozo.nishida at gmail.com>

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("AHPathbankDbs")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AHPathbankDbs")

Follow Installation instructions to use this package in your R session.

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