This is the released version of treeio; for the devel version, see treeio.
Base Classes and Functions for Phylogenetic Tree Input and OutputBioconductor version: Release (3.21)
'treeio' is an R package to make it easier to import and store phylogenetic tree with associated data; and to link external data from different sources to phylogeny. It also supports exporting phylogenetic tree with heterogeneous associated data to a single tree file and can be served as a platform for merging tree with associated data and converting file formats.
Author: Guangchuang Yu [aut, cre] ORCID: 0000-0002-6485-8781 , Tommy Tsan-Yuk Lam [ctb, ths], Shuangbin Xu [ctb] ORCID: 0000-0003-3513-5362 , Bradley Jones [ctb], Casey Dunn [ctb], Tyler Bradley [ctb], Konstantinos Geles [ctb]
Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>
Citation (from within R, entercitation("treeio")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("treeio")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("treeio")Follow Installation instructions to use this package in your R session.
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