This is the released version of zenith; for the devel version, see zenith.
Gene set analysis following differential expression using linear (mixed) modeling with dreamBioconductor version: Release (3.21)
Zenith performs gene set analysis on the result of differential expression using linear (mixed) modeling with dream by considering the correlation between gene expression traits. This package implements the camera method from the limma package proposed by Wu and Smyth (2012). Zenith is a simple extension of camera to be compatible with linear mixed models implemented in variancePartition::dream().
Author: Gabriel Hoffman [aut, cre] ORCID: 0000-0002-0957-0224
Maintainer: Gabriel Hoffman <gabriel.hoffman at mssm.edu>
Citation (from within R, entercitation("zenith")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("zenith")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("zenith")Follow Installation instructions to use this package in your R session.
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