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Bioconductor - vsclust

vsclust

This is the released version of vsclust; for the devel version, see vsclust.

Feature-based variance-sensitive quantitative clustering

Bioconductor version: Release (3.21)

Feature-based variance-sensitive clustering of omics data. Optimizes cluster assignment by taking into account individual feature variance. Includes several modules for statistical testing, clustering and enrichment analysis.

Author: Veit Schwammle [aut, cre]

Maintainer: Veit Schwammle <veits at bmb.sdu.dk>

Citation (from within R, enter citation("vsclust")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("vsclust")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("vsclust")
Details biocViews Annotation, Clustering, DifferentialExpression, Metabolomics, PrincipalComponent, Proteomics, Software, Visualization Version 1.10.0 In Bioconductor since BioC 3.16 (R-4.2) (2.5 years) License GPL-2 Depends R (>= 4.2.0) Imports matrixStats, limma, parallel, shiny, qvalue, grDevices, stats, MultiAssayExperiment, graphics System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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