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Bioconductor - terraTCGAdata

terraTCGAdata

This is the released version of terraTCGAdata; for the devel version, see terraTCGAdata.

OpenAccess TCGA Data on Terra as MultiAssayExperiment

Bioconductor version: Release (3.21)

Leverage the existing open access TCGA data on Terra with well-established Bioconductor infrastructure. Make use of the Terra data model without learning its complexities. With a few functions, you can copy / download and generate a MultiAssayExperiment from the TCGA example workspaces provided by Terra.

Author: Marcel Ramos [aut, cre] ORCID: 0000-0002-3242-0582

Maintainer: Marcel Ramos <marcel.ramos at sph.cuny.edu>

Citation (from within R, enter citation("terraTCGAdata")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("terraTCGAdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("terraTCGAdata")
Details biocViews DataImport, Infrastructure, Software Version 1.12.0 In Bioconductor since BioC 3.15 (R-4.2) (3 years) License Artistic-2.0 Depends AnVILGCP, MultiAssayExperiment Imports AnVIL, BiocFileCache, dplyr, GenomicRanges, methods, RaggedExperiment, readr, S4Vectors, stats, tidyr, TCGAutils, utils System Requirements URL https://github.com/waldronlab/terraTCGAdata Bug Reports https://github.com/waldronlab/terraTCGAdata/issues See More Package Archives

Follow Installation instructions to use this package in your R session.


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