This is the released version of terapadog; for the devel version, see terapadog.
Translational Efficiency Regulation Analysis using the PADOG MethodBioconductor version: Release (3.21)
This package performs a Gene Set Analysis with the approach adopted by PADOG on the genes that are reported as translationally regulated (ie. exhibit a significant change in TE) by the DeltaTE package. It can be used on its own to see the impact of translation regulation on gene sets, but it is also integrated as an additional analysis method within ReactomeGSA, where results are further contextualised in terms of pathways and directionality of the change.
Author: Gionmattia Carancini [cre, aut] ORCID: 0000-0001-7936-4883
Maintainer: Gionmattia Carancini <gionmattia at gmail.com>
Citation (from within R, entercitation("terapadog")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("terapadog")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("terapadog")Follow Installation instructions to use this package in your R session.
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