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Bioconductor - tRNAscanImport

tRNAscanImport

This is the released version of tRNAscanImport; for the devel version, see tRNAscanImport.

Importing a tRNAscan-SE result file as GRanges object

Bioconductor version: Release (3.21)

The package imports the result of tRNAscan-SE as a GRanges object.

Author: Felix G.M. Ernst [aut, cre] ORCID: 0000-0001-5064-0928

Maintainer: Felix G.M. Ernst <felix.gm.ernst at outlook.com>

Citation (from within R, enter citation("tRNAscanImport")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("tRNAscanImport")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tRNAscanImport")
Details biocViews DataImport, Preprocessing, Software, Visualization, WorkflowStep Version 1.28.0 In Bioconductor since BioC 3.7 (R-3.5) (7 years) License GPL-3 + file LICENSE Depends R (>= 3.5), GenomicRanges, tRNA Imports methods, stringr, BiocGenerics, Biostrings, Structstrings, S4Vectors, IRanges, XVector, GenomeInfoDb, rtracklayer, BSgenome, Rsamtools System Requirements URL https://github.com/FelixErnst/tRNAscanImport Bug Reports https://github.com/FelixErnst/tRNAscanImport/issues See More Package Archives

Follow Installation instructions to use this package in your R session.


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