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Bioconductor - sparseMatrixStats

sparseMatrixStats

This is the released version of sparseMatrixStats; for the devel version, see sparseMatrixStats.

Summary Statistics for Rows and Columns of Sparse Matrices

Bioconductor version: Release (3.21)

High performance functions for row and column operations on sparse matrices. For example: col / rowMeans2, col / rowMedians, col / rowVars etc. Currently, the optimizations are limited to data in the column sparse format. This package is inspired by the matrixStats package by Henrik Bengtsson.

Author: Constantin Ahlmann-Eltze [aut, cre] ORCID: 0000-0002-3762-068X

Maintainer: Constantin Ahlmann-Eltze <artjom31415 at googlemail.com>

Citation (from within R, enter citation("sparseMatrixStats")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("sparseMatrixStats")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sparseMatrixStats")
Details See More Suggests testthat (>= 2.1.0), knitr, bench, rmarkdown, BiocStyle Linking To Rcpp Enhances Depends On Me Imports Me atena, ccImpute, concordexR, DelayedMatrixStats, dreamlet, GSVA, scone, SimBu, smartid, smoothclust, SplineDV, SPOTlight, adjclust, CRMetrics, GrabSVG, mombf, scBSP Suggests Me APL, MatrixGenerics, miloR, scPCA, scrapper, scuttle, SpatialFeatureExperiment, StabMap, zinbwave, singleCellHaystack Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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