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Bioconductor - qsmooth

qsmooth

This is the released version of qsmooth; for the devel version, see qsmooth.

Smooth quantile normalization

Bioconductor version: Release (3.21)

Smooth quantile normalization is a generalization of quantile normalization, which is average of the two types of assumptions about the data generation process: quantile normalization and quantile normalization between groups.

Author: Stephanie C. Hicks [aut, cre] ORCID: 0000-0002-7858-0231 , Kwame Okrah [aut], Koen Van den Berge [ctb], Hector Corrada Bravo [aut] ORCID: 0000-0002-1255-4444 , Rafael Irizarry [aut] ORCID: 0000-0002-3944-4309

Maintainer: Stephanie C. Hicks <shicks19 at jhu.edu>

Citation (from within R, enter citation("qsmooth")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("qsmooth")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("qsmooth")
Details biocViews BatchEffect, Microarray, MultipleComparison, Normalization, Preprocessing, RNASeq, Sequencing, Software Version 1.24.0 In Bioconductor since BioC 3.9 (R-3.6) (6 years) License GPL-3 Depends R (>= 4.0) Imports SummarizedExperiment, utils, sva, stats, methods, graphics, Hmisc System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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