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qckitfastq

This is the released version of qckitfastq; for the devel version, see qckitfastq.

FASTQ Quality Control

Bioconductor version: Release (3.21)

Assessment of FASTQ file format with multiple metrics including quality score, sequence content, overrepresented sequence and Kmers.

Author: Wenyue Xing [aut], August Guang [aut, cre]

Maintainer: August Guang <august.guang at gmail.com>

Citation (from within R, enter citation("qckitfastq")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("qckitfastq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("qckitfastq")

Quality control analysis and visualization using qckitfastq PDF R Script Reference Manual PDF NEWS Text Details biocViews QualityControl, Sequencing, Software Version 1.24.0 In Bioconductor since BioC 3.9 (R-3.6) (6 years) License Artistic-2.0 Depends Imports magrittr, ggplot2, dplyr, seqTools, zlibbioc, data.table, reshape2, grDevices, graphics, stats, utils, Rcpp, rlang, RSeqAn System Requirements GNU make URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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