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Bioconductor - projectR

projectR

This is the released version of projectR; for the devel version, see projectR.

Functions for the projection of weights from PCA, CoGAPS, NMF, correlation, and clustering

Bioconductor version: Release (3.21)

Functions for the projection of data into the spaces defined by PCA, CoGAPS, NMF, correlation, and clustering.

Author: Gaurav Sharma, Charles Shin, Jared Slosberg, Loyal Goff, Genevieve Stein-O'Brien

Maintainer: Genevieve Stein-O'Brien <gsteinobrien at gmail.com>

Citation (from within R, enter citation("projectR")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("projectR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("projectR")
Details biocViews BiologicalQuestion, FunctionalPrediction, GeneRegulation, Software Version 1.24.0 In Bioconductor since BioC 3.9 (R-3.6) (6 years) License GPL (==2) Depends R (>= 4.0.0) Imports SingleCellExperiment, methods, cluster, stats, limma, NMF, ROCR, ggalluvial, RColorBrewer, dplyr, fgsea, reshape2, viridis, scales, Matrix, MatrixModels, msigdbr, ggplot2, cowplot, ggrepel, umap, tsne System Requirements URL https://github.com/genesofeve/projectR/ Bug Reports https://support.bioconductor.org/t/projectR/ See More Suggests BiocStyle, CoGAPS, gridExtra, grid, testthat, devtools, knitr, rmarkdown, ComplexHeatmap, gplots, SeuratObject Linking To Enhances Depends On Me Imports Me Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.


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