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Bioconductor - nucleoSim

This is the released version of nucleoSim; for the devel version, see nucleoSim.

Bioconductor version: Release (3.21)

This package can generate a synthetic map with reads covering the nucleosome regions as well as a synthetic map with forward and reverse reads emulating next-generation sequencing. The synthetic hybridization data of “Tiling Arrays” can also be generated. The user has choice between three different distributions for the read positioning: Normal, Student and Uniform. In addition, a visualization tool is provided to explore the synthetic nucleosome maps.

Author: Rawane Samb [aut], Astrid Deschênes [cre, aut] ORCID: 0000-0001-7846-6749 , Pascal Belleau [aut] ORCID: 0000-0002-0802-1071 , Arnaud Droit [aut]

Maintainer: Astrid Deschênes <adeschen at hotmail.com>

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("nucleoSim")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("nucleoSim")

Follow Installation instructions to use this package in your R session.

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