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nucleR

This is the released version of nucleR; for the devel version, see nucleR.

Nucleosome positioning package for R

Bioconductor version: Release (3.21)

Nucleosome positioning for Tiling Arrays and NGS experiments.

Author: Oscar Flores, Ricard Illa

Maintainer: Alba Sala <alba.sala at irbbarcelona.org>

Citation (from within R, enter citation("nucleR")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("nucleR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("nucleR")

Details biocViews ChIPSeq, Coverage, DataImport, Genetics, Microarray, NucleosomePositioning, QualityControl, Sequencing, Software Version 2.40.0 In Bioconductor since BioC 2.9 (R-2.14) (13.5 years) License LGPL (>= 3) Depends R (>= 3.5.0), methods Imports Biobase, BiocGenerics, Biostrings, GenomeInfoDb, GenomicRanges, IRanges, Rsamtools, S4Vectors, ShortRead, dplyr, ggplot2, magrittr, parallel, stats, utils, grDevices System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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