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Bioconductor - netprioR

netprioR

This is the released version of netprioR; for the devel version, see netprioR.

A model for network-based prioritisation of genes

Bioconductor version: Release (3.21)

A model for semi-supervised prioritisation of genes integrating network data, phenotypes and additional prior knowledge about TP and TN gene labels from the literature or experts.

Author: Fabian Schmich

Maintainer: Fabian Schmich <fabian.schmich at bsse.ethz.ch>

Citation (from within R, enter citation("netprioR")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("netprioR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("netprioR")
Details biocViews CellBasedAssays, ImmunoOncology, Network, Preprocessing, Software Version 1.34.0 In Bioconductor since BioC 3.4 (R-3.3) (8.5 years) License GPL-3 Depends methods, graphics, R (>= 3.3) Imports stats, Matrix, dplyr, doParallel, foreach, parallel, sparseMVN, ggplot2, gridExtra, pROC System Requirements URL http://bioconductor.org/packages/netprioR See More Package Archives

Follow Installation instructions to use this package in your R session.

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