This is the released version of nethet; for the devel version, see nethet.
A bioconductor package for high-dimensional exploration of biological network heterogeneityBioconductor version: Release (3.21)
Package nethet is an implementation of statistical solid methodology enabling the analysis of network heterogeneity from high-dimensional data. It combines several implementations of recent statistical innovations useful for estimation and comparison of networks in a heterogeneous, high-dimensional setting. In particular, we provide code for formal two-sample testing in Gaussian graphical models (differential network and GGM-GSA; Stadler and Mukherjee, 2013, 2014) and make a novel network-based clustering algorithm available (mixed graphical lasso, Stadler and Mukherjee, 2013).
Author: Nicolas Staedler, Frank Dondelinger
Maintainer: Nicolas Staedler <staedler.n at gmail.com>, Frank Dondelinger <fdondelinger.work at gmail.com>
Citation (from within R, entercitation("nethet")
): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("nethet")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("nethet")
Details biocViews Clustering, GraphAndNetwork, Software Version 1.40.0 In Bioconductor since BioC 3.1 (R-3.2) (10 years) License GPL-2 Depends Imports glasso, mvtnorm, GeneNet, huge, CompQuadForm, ggm, mclust, parallel, GSA, limma, multtest, ICSNP, glmnet, network, ggplot2, grDevices, graphics, stats, utils System Requirements URL See More Package Archives
Follow Installation instructions to use this package in your R session.
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