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Bioconductor - mzID

mzID

This is the released version of mzID; for the devel version, see mzID.

An mzIdentML parser for R

Bioconductor version: Release (3.21)

A parser for mzIdentML files implemented using the XML package. The parser tries to be general and able to handle all types of mzIdentML files with the drawback of having less 'pretty' output than a vendor specific parser. Please contact the maintainer with any problems and supply an mzIdentML file so the problems can be fixed quickly.

Author: Laurent Gatto [ctb, cre] ORCID: 0000-0002-1520-2268 , Thomas Pedersen [aut] ORCID: 0000-0002-6977-7147 , Vladislav Petyuk [ctb]

Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>

Citation (from within R, enter citation("mzID")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("mzID")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mzID")
Details biocViews DataImport, ImmunoOncology, MassSpectrometry, Proteomics, Software Version 1.46.0 In Bioconductor since BioC 2.13 (R-3.0) (11.5 years) License GPL (>= 2) Depends methods Imports XML, plyr, parallel, doParallel, foreach, iterators, ProtGenerics System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.


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