This is the released version of motifTestR; for the devel version, see motifTestR.
Perform key tests for binding motifs in sequence dataBioconductor version: Release (3.21)
Taking a set of sequence motifs as PWMs, test a set of sequences for over-representation of these motifs, as well as any positional features within the set of motifs. Enrichment analysis can be undertaken using multiple statistical approaches. The package also contains core functions to prepare data for analysis, and to visualise results.
Author: Stevie Pederson [aut, cre] ORCID: 0000-0001-8197-3303
Maintainer: Stevie Pederson <stephen.pederson.au at gmail.com>
Citation (from within R, entercitation("motifTestR")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("motifTestR")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("motifTestR")Follow Installation instructions to use this package in your R session.
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