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Bioconductor - mosaics

mosaics

This is the released version of mosaics; for the devel version, see mosaics.

MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)

Bioconductor version: Release (3.21)

This package provides functions for fitting MOSAiCS and MOSAiCS-HMM, a statistical framework to analyze one-sample or two-sample ChIP-seq data of transcription factor binding and histone modification.

Author: Dongjun Chung, Pei Fen Kuan, Rene Welch, Sunduz Keles

Maintainer: Dongjun Chung <dongjun.chung at gmail.com>

Citation (from within R, enter citation("mosaics")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("mosaics")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mosaics")
Details biocViews Bioinformatics, ChIPseq, Genetics, Sequencing, Software, Transcription Version 2.46.0 In Bioconductor since BioC 2.8 (R-2.13) (14 years) License GPL (>= 2) Depends R (>= 3.0.0), methods, graphics, Rcpp Imports MASS, splines, lattice, IRanges, GenomicRanges, GenomicAlignments, Rsamtools, GenomeInfoDb, S4Vectors System Requirements Perl URL http://groups.google.com/group/mosaics_user_group See More Package Archives

Follow Installation instructions to use this package in your R session.

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