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Bioconductor - mitology

mitology

This is the released version of mitology; for the devel version, see mitology.

Study of mitochondrial activity from RNA-seq data

Bioconductor version: Release (3.21)

mitology allows to study the mitochondrial activity throught high-throughput RNA-seq data. It is based on a collection of genes whose proteins localize in to the mitochondria. From these, mitology provides a reorganization of the pathways related to mitochondria activity from Reactome and Gene Ontology. Further a ready-to-use implementation of MitoCarta3.0 pathways is included.

Author: Stefania Pirrotta [cre, aut] ORCID: 0009-0004-0030-217X , Enrica Calura [aut, fnd] ORCID: 0000-0001-8463-2432

Maintainer: Stefania Pirrotta <stefania.pirrotta at unipd.it>

Citation (from within R, enter citation("mitology")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("mitology")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mitology")
Details biocViews GO, GeneExpression, Pathways, RNASeq, Reactome, SingleCell, Software, Spatial, Visualization Version 1.0.0 In Bioconductor since BioC 3.21 (R-4.5) (< 6 months) License AGPL-3 Depends R (>= 4.5.0) Imports AnnotationDbi, ape, circlize, ComplexHeatmap, ggplot2, ggtree, magrittr, org.Hs.eg.db, scales System Requirements URL https://github.com/CaluraLab/mitology Bug Reports https://github.com/CaluraLab/mitology/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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