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Bioconductor - mirTarRnaSeq

mirTarRnaSeq

This is the released version of mirTarRnaSeq; for the devel version, see mirTarRnaSeq.

mirTarRnaSeq

Bioconductor version: Release (3.21)

mirTarRnaSeq R package can be used for interactive mRNA miRNA sequencing statistical analysis. This package utilizes expression or differential expression mRNA and miRNA sequencing results and performs interactive correlation and various GLMs (Regular GLM, Multivariate GLM, and Interaction GLMs ) analysis between mRNA and miRNA expriments. These experiments can be time point experiments, and or condition expriments.

Author: Mercedeh Movassagh [aut, cre] ORCID: 0000-0001-7690-0230 , Sarah Morton [aut], Rafael Irizarry [aut], Jeffrey Bailey [aut], Joseph N Paulson [aut]

Maintainer: Mercedeh Movassagh <mercedeh at ds.dfci.harvard.edu>

Citation (from within R, enter citation("mirTarRnaSeq")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("mirTarRnaSeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mirTarRnaSeq")
Details biocViews DifferentialExpression, Regression, Sequencing, SmallRNA, Software, TimeCourse, miRNA Version 1.16.0 In Bioconductor since BioC 3.13 (R-4.1) (4 years) License MIT + file LICENSE Depends R (>= 4.1.0), ggplot2 Imports purrr, MASS, pscl, assertthat, caTools, dplyr, pheatmap, reshape2, corrplot, grDevices, graphics, stats, utils, data.table, R.utils, viridis System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.


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