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Bioconductor - miaDash

miaDash

This is the released version of miaDash; for the devel version, see miaDash.

Shiny app for the interactive analysis and exploration of microbiome data

Bioconductor version: Release (3.21)

miaDash provides a Graphical User Interface for the exploration of microbiome data. This way, no knowledge of programming is required to perform analyses. Datasets can be imported, manipulated, analysed and visualised with a user-friendly interface.

Author: Giulio Benedetti [aut, cre] ORCID: 0000-0002-8732-7692 , Akewak Jeba [ctb] ORCID: 0009-0007-1347-7552 , Leo Lahti [aut] ORCID: 0000-0001-5537-637X

Maintainer: Giulio Benedetti <giulio.benedetti at utu.fi>

Citation (from within R, enter citation("miaDash")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("miaDash")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("miaDash")
Details biocViews DataImport, GUI, Microbiome, ShinyApps, Software, Visualization Version 1.0.0 In Bioconductor since BioC 3.21 (R-4.5) (< 6 months) License Artistic-2.0 Depends R (>= 4.4.0), iSEE, shiny Imports ape, biomformat, htmltools, iSEEtree(>= 1.1.4), mia, rintrojs, scater, shinydashboard, shinyjs, S4Vectors, SingleCellExperiment, SummarizedExperiment, TreeSummarizedExperiment, utils, vegan System Requirements URL https://github.com/microbiome/miaDash Bug Reports https://github.com/microbiome/miaDash/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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