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Bioconductor - methylInheritance

methylInheritance

This is the released version of methylInheritance; for the devel version, see methylInheritance.

Permutation-Based Analysis associating Conserved Differentially Methylated Elements Across Multiple Generations to a Treatment Effect

Bioconductor version: Release (3.21)

Permutation analysis, based on Monte Carlo sampling, for testing the hypothesis that the number of conserved differentially methylated elements, between several generations, is associated to an effect inherited from a treatment and that stochastic effect can be dismissed.

Author: Astrid Deschênes [cre, aut] ORCID: 0000-0001-7846-6749 , Pascal Belleau [aut] ORCID: 0000-0002-0802-1071 , Arnaud Droit [aut]

Maintainer: Astrid Deschênes <adeschen at hotmail.com>

Citation (from within R, enter citation("methylInheritance")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("methylInheritance")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("methylInheritance")
Permutation-Based Analysis associating Conserved Differentially Methylated Elements Across Multiple Generations to a Treatment Effect HTML R Script Reference Manual PDF NEWS Text Details biocViews BiologicalQuestion, DNAMethylation, DifferentialMethylation, Epigenetics, ImmunoOncology, MethylSeq, Sequencing, Software, StatisticalMethod, WholeGenome Version 1.32.0 In Bioconductor since BioC 3.5 (R-3.4) (8 years) License Artistic-2.0 Depends R (>= 3.5) Imports methylKit, BiocParallel, GenomicRanges, IRanges, S4Vectors, methods, parallel, ggplot2, gridExtra, rebus System Requirements URL https://github.com/adeschen/methylInheritance Bug Reports https://github.com/adeschen/methylInheritance/issues See More Package Archives

Follow Installation instructions to use this package in your R session.


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