This is the released version of icetea; for the devel version, see icetea.
Integrating Cap Enrichment with Transcript Expression AnalysisBioconductor version: Release (3.21)
icetea (Integrating Cap Enrichment with Transcript Expression Analysis) provides functions for end-to-end analysis of multiple 5'-profiling methods such as CAGE, RAMPAGE and MAPCap, beginning from raw reads to detection of transcription start sites using replicates. It also allows performing differential TSS detection between group of samples, therefore, integrating the mRNA cap enrichment information with transcript expression analysis.
Author: Vivek Bhardwaj [aut, cre]
Maintainer: Vivek Bhardwaj <v.bhardwaj at hubrecht.eu>
Citation (from within R, entercitation("icetea")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("icetea")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("icetea")Follow Installation instructions to use this package in your R session.
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