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Bioconductor - hdxmsqc

hdxmsqc

This is the released version of hdxmsqc; for the devel version, see hdxmsqc.

An R package for quality Control for hydrogen deuterium exchange mass spectrometry experiments

Bioconductor version: Release (3.21)

The hdxmsqc package enables us to analyse and visualise the quality of HDX-MS experiments. Either as a final quality check before downstream analysis and publication or as part of a interative procedure to determine the quality of the data. The package builds on the QFeatures and Spectra packages to integrate with other mass-spectrometry data.

Author: Oliver M. Crook [aut, cre] ORCID: 0000-0001-5669-8506

Maintainer: Oliver M. Crook <oliver.crook at stats.ox.ac.uk>

Citation (from within R, enter citation("hdxmsqc")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("hdxmsqc")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("hdxmsqc")
Qualityt control for differential hydrogen deuterium exchange mass spectrometry data HTML R Script Reference Manual PDF NEWS Text LICENSE Text Details biocViews DataImport, MassSpectrometry, Metabolomics, Proteomics, QualityControl, Software Version 1.4.0 In Bioconductor since BioC 3.19 (R-4.4) (1 year) License file LICENSE Depends R (>= 4.3), QFeatures, S4Vectors, Spectra Imports dplyr, tidyr, ggplot2, BiocStyle, knitr, methods, grDevices, stats, MsCoreUtils System Requirements URL http://github.com/ococrook/hdxmsqc Bug Reports https://github.com/ococrook/hdxmsqc/issues See More Package Archives

Follow Installation instructions to use this package in your R session.


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