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Bioconductor - diffcoexp

diffcoexp

This is the released version of diffcoexp; for the devel version, see diffcoexp.

Differential Co-expression Analysis

Bioconductor version: Release (3.21)

A tool for the identification of differentially coexpressed links (DCLs) and differentially coexpressed genes (DCGs). DCLs are gene pairs with significantly different correlation coefficients under two conditions. DCGs are genes with significantly more DCLs than by chance.

Author: Wenbin Wei, Sandeep Amberkar, Winston Hide

Maintainer: Wenbin Wei <wenbin.wei2 at durham.ac.uk>

Citation (from within R, enter citation("diffcoexp")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("diffcoexp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("diffcoexp")
Details biocViews Coverage, DifferentialExpression, GeneExpression, ImmunoOncology, Microarray, OneChannel, RNASeq, Sequencing, Software, Transcription, TwoChannel Version 1.28.0 In Bioconductor since BioC 3.7 (R-3.5) (7 years) License GPL (>2) Depends R (>= 3.5), WGCNA, SummarizedExperiment Imports stats, DiffCorr, psych, igraph, BiocGenerics System Requirements URL https://github.com/hidelab/diffcoexp See More Package Archives

Follow Installation instructions to use this package in your R session.

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