This is the released version of demuxmix; for the devel version, see demuxmix.
Demultiplexing oligo-barcoded scRNA-seq data using regression mixture modelsBioconductor version: Release (3.21)
A package for demultiplexing single-cell sequencing experiments of pooled cells labeled with barcode oligonucleotides. The package implements methods to fit regression mixture models for a probabilistic classification of cells, including multiplet detection. Demultiplexing error rates can be estimated, and methods for quality control are provided.
Author: Hans-Ulrich Klein [aut, cre] ORCID: 0000-0002-6382-9428
Maintainer: Hans-Ulrich Klein <hansulrich.klein at gmail.com>
Citation (from within R, entercitation("demuxmix")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("demuxmix")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("demuxmix")Follow Installation instructions to use this package in your R session.
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