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Bioconductor - crisprViz

crisprViz

This is the released version of crisprViz; for the devel version, see crisprViz.

Visualization Functions for CRISPR gRNAs

Bioconductor version: Release (3.21)

Provides functionalities to visualize and contextualize CRISPR guide RNAs (gRNAs) on genomic tracks across nucleases and applications. Works in conjunction with the crisprBase and crisprDesign Bioconductor packages. Plots are produced using the Gviz framework.

Author: Jean-Philippe Fortin [aut, cre], Luke Hoberecht [aut]

Maintainer: Jean-Philippe Fortin <fortin946 at gmail.com>

Citation (from within R, enter citation("crisprViz")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("crisprViz")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("crisprViz")
Details biocViews CRISPR, FunctionalGenomics, GeneTarget, Software Version 1.10.0 In Bioconductor since BioC 3.16 (R-4.2) (2.5 years) License MIT + file LICENSE Depends R (>= 4.2.0), crisprBase(>= 0.99.15), crisprDesign(>= 0.99.77) Imports BiocGenerics, Biostrings, BSgenome, GenomeInfoDb, GenomicFeatures, GenomicRanges, grDevices, Gviz, IRanges, methods, S4Vectors, txdbmaker System Requirements URL https://github.com/crisprVerse/crisprViz Bug Reports https://github.com/crisprVerse/crisprViz/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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