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Bioconductor - compEpiTools

compEpiTools

This is the released version of compEpiTools; for the devel version, see compEpiTools.

Tools for computational epigenomics

Bioconductor version: Release (3.21)

Tools for computational epigenomics developed for the analysis, integration and simultaneous visualization of various (epi)genomics data types across multiple genomic regions in multiple samples.

Author: Mattia Pelizzola [aut], Kamal Kishore [aut], Mattia Furlan [ctb, cre]

Maintainer: Mattia Furlan <mattia.furlan at iit.it>

Citation (from within R, enter citation("compEpiTools")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("compEpiTools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("compEpiTools")
Details biocViews Coverage, GeneExpression, GenomeAnnotation, Sequencing, Software, Visualization Version 1.42.0 In Bioconductor since BioC 3.0 (R-3.1) (10.5 years) License GPL Depends R (>= 3.5.0), methods, topGO, GenomicRanges Imports AnnotationDbi, BiocGenerics, Biostrings, Rsamtools, parallel, grDevices, gplots, IRanges, GenomicFeatures, XVector, methylPipe, GO.db, S4Vectors, GenomeInfoDb System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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