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Bioconductor - cliProfiler

cliProfiler

This is the released version of cliProfiler; for the devel version, see cliProfiler.

A package for the CLIP data visualization

Bioconductor version: Release (3.21)

An easy and fast way to visualize and profile the high-throughput IP data. This package generates the meta gene profile and other profiles. These profiles could provide valuable information for understanding the IP experiment results.

Author: You Zhou [aut, cre] ORCID: 0000-0003-1755-9073 , Kathi Zarnack [aut] ORCID: 0000-0003-3527-3378

Maintainer: You Zhou <youzhoulearning at gmail.com>

Citation (from within R, enter citation("cliProfiler")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("cliProfiler")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cliProfiler")
Details biocViews ChIPSeq, Epigenetics, Genetics, Sequencing, Software, Visualization Version 1.14.0 In Bioconductor since BioC 3.14 (R-4.1) (3.5 years) License Artistic-2.0 Depends S4Vectors, methods, R (>= 4.1) Imports dplyr, rtracklayer, GenomicRanges, ggplot2, BSgenome, Biostrings, utils System Requirements URL https://github.com/Codezy99/cliProfiler Bug Reports https://github.com/Codezy99/cliProfiler/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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