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Bioconductor - clevRvis

clevRvis

This is the released version of clevRvis; for the devel version, see clevRvis.

Visualization Techniques for Clonal Evolution

Bioconductor version: Release (3.21)

clevRvis provides a set of visualization techniques for clonal evolution. These include shark plots, dolphin plots and plaice plots. Algorithms for time point interpolation as well as therapy effect estimation are provided. Phylogeny-aware color coding is implemented. A shiny-app for generating plots interactively is additionally provided.

Author: Sarah Sandmann [aut, cre] ORCID: 0000-0002-5011-0641

Maintainer: Sarah Sandmann <sarah.sandmann at uni-muenster.de>

Citation (from within R, enter citation("clevRvis")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("clevRvis")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("clevRvis")
Details biocViews ShinyApps, Software, Visualization Version 1.8.0 In Bioconductor since BioC 3.17 (R-4.3) (2 years) License LGPL-3 Depends Imports shiny, ggraph, igraph, ggiraph, cowplot, htmlwidgets, readxl, dplyr, readr, purrr, tibble, patchwork, R.utils, shinyWidgets, colorspace, shinyhelper, shinycssloaders, ggnewscale, shinydashboard, DT, colourpicker, grDevices, methods, utils, stats, ggplot2, magrittr, tools System Requirements URL https://github.com/sandmanns/clevRvis Bug Reports https://github.com/sandmanns/clevRvis/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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