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Bioconductor - cellmigRation

cellmigRation

This is the released version of cellmigRation; for the devel version, see cellmigRation.

Track Cells, Analyze Cell Trajectories and Compute Migration Statistics

Bioconductor version: Release (3.21)

Import TIFF images of fluorescently labeled cells, and track cell movements over time. Parallelization is supported for image processing and for fast computation of cell trajectories. In-depth analysis of cell trajectories is enabled by 15 trajectory analysis functions.

Author: Salim Ghannoum [aut, cph], Damiano Fantini [aut, cph], Waldir Leoncio [cre, aut], Øystein Sørensen [aut]

Maintainer: Waldir Leoncio <w.l.netto at medisin.uio.no>

Citation (from within R, enter citation("cellmigRation")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("cellmigRation")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cellmigRation")
Details biocViews CellBiology, DataImport, DataRepresentation, Software Version 1.16.0 In Bioconductor since BioC 3.13 (R-4.1) (4 years) License GPL-2 Depends R (>= 4.1), methods, foreach Imports tiff, graphics, stats, utils, reshape2, parallel, doParallel, grDevices, matrixStats, FME, SpatialTools, sp, vioplot, FactoMineR, Hmisc System Requirements URL https://github.com/ocbe-uio/cellmigRation/ Bug Reports https://github.com/ocbe-uio/cellmigRation/issues See More Package Archives

Follow Installation instructions to use this package in your R session.


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