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Bioconductor - calm

calm

This is the released version of calm; for the devel version, see calm.

Covariate Assisted Large-scale Multiple testing

Bioconductor version: Release (3.21)

Statistical methods for multiple testing with covariate information. Traditional multiple testing methods only consider a list of test statistics, such as p-values. Our methods incorporate the auxiliary information, such as the lengths of gene coding regions or the minor allele frequencies of SNPs, to improve power.

Author: Kun Liang [aut, cre]

Maintainer: Kun Liang <kun.liang at uwaterloo.ca>

Citation (from within R, enter citation("calm")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("calm")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("calm")
Details biocViews Bayesian, DifferentialExpression, GeneExpression, Genetics, ImmunoOncology, Metabolomics, Microarray, MultipleComparison, Proteomics, RNASeq, Regression, Sequencing, Software, Transcriptomics Version 1.22.0 In Bioconductor since BioC 3.10 (R-3.6) (5.5 years) License GPL (>=2) Depends Imports mgcv, stats, graphics System Requirements URL Bug Reports https://github.com/k22liang/calm/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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