This is the released version of blacksheepr; for the devel version, see blacksheepr.
Outlier Analysis for pairwise differential comparisonBioconductor version: Release (3.21)
Blacksheep is a tool designed for outlier analysis in the context of pairwise comparisons in an effort to find distinguishing characteristics from two groups. This tool was designed to be applied for biological applications such as phosphoproteomics or transcriptomics, but it can be used for any data that can be represented by a 2D table, and has two sub populations within the table to compare.
Author: MacIntosh Cornwell [aut], RugglesLab [cre]
Maintainer: RugglesLab <ruggleslab at gmail.com>
Citation (from within R, entercitation("blacksheepr")
): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("blacksheepr")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("blacksheepr")
Details biocViews DifferentialExpression, GeneExpression, RNASeq, Sequencing, Software, Transcription, Transcriptomics Version 1.22.0 In Bioconductor since BioC 3.10 (R-3.6) (5.5 years) License MIT + file LICENSE Depends R (>= 3.6) Imports grid, stats, grDevices, utils, circlize, viridis, RColorBrewer, ComplexHeatmap, SummarizedExperiment, pasilla System Requirements URL Bug Reports https://github.com/ruggleslab/blacksheepr/issues See More Package Archives
Follow Installation instructions to use this package in your R session.
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