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Bioconductor - arrayQualityMetrics

arrayQualityMetrics

This is the released version of arrayQualityMetrics; for the devel version, see arrayQualityMetrics.

Quality metrics report for microarray data sets

Bioconductor version: Release (3.21)

This package generates microarray quality metrics reports for data in Bioconductor microarray data containers (ExpressionSet, NChannelSet, AffyBatch). One and two color array platforms are supported.

Author: Audrey Kauffmann, Wolfgang Huber

Maintainer: Mike Smith <mike.smith at embl.de>

Citation (from within R, enter citation("arrayQualityMetrics")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("arrayQualityMetrics")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("arrayQualityMetrics")
Advanced topics: Customizing arrayQualityMetrics reports and programmatic processing of the output PDF R Script Introduction: microarray quality assessment with arrayQualityMetrics PDF R Script Reference Manual PDF NEWS Text Details biocViews Microarray, OneChannel, QualityControl, ReportWriting, Software, TwoChannel Version 3.64.0 In Bioconductor since BioC 2.1 (R-2.6) (18 years) License LGPL (>= 2) Depends Imports affy, affyPLM(>= 1.27.3), beadarray, Biobase, genefilter, graphics, grDevices, grid, gridSVG (>= 1.4-3), Hmisc, hwriter, lattice, latticeExtra, limma, methods, RColorBrewer, setRNG, stats, utils, vsn(>= 3.23.3), XML, svglite System Requirements URL Bug Reports https://github.com/grimbough/arrayQualityMetrics/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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