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Bioconductor - apeglm

apeglm

This is the released version of apeglm; for the devel version, see apeglm.

Approximate posterior estimation for GLM coefficients

Bioconductor version: Release (3.21)

apeglm provides Bayesian shrinkage estimators for effect sizes for a variety of GLM models, using approximation of the posterior for individual coefficients.

Author: Anqi Zhu [aut, cre], Joshua Zitovsky [ctb], Joseph Ibrahim [aut], Michael Love [aut]

Maintainer: Anqi Zhu <anqizhu at live.unc.edu>

Citation (from within R, enter citation("apeglm")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("apeglm")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("apeglm")
Details biocViews Bayesian, DifferentialExpression, GeneExpression, ImmunoOncology, RNASeq, Sequencing, Software Version 1.30.0 In Bioconductor since BioC 3.6 (R-3.4) (7.5 years) License GPL-2 Depends Imports emdbook, SummarizedExperiment, GenomicRanges, methods, stats, utils, Rcpp System Requirements URL See More Suggests DESeq2, airway, knitr, rmarkdown, testthat Linking To Rcpp, RcppEigen, RcppNumerical Enhances Depends On Me rnaseqGene Imports Me airpart, debrowser, DiffBind, ERSSA, phantasus, Rmmquant, TEKRABber Suggests Me bambu, dar, DESeq2, extraChIPs, fishpond, terapadog, NanoporeRNASeq, RNAseqQC Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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