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Bioconductor - alevinQC

alevinQC

This is the released version of alevinQC; for the devel version, see alevinQC.

Generate QC Reports For Alevin Output

Bioconductor version: Release (3.21)

Generate QC reports summarizing the output from an alevin, alevin-fry, or simpleaf run. Reports can be generated as html or pdf files, or as shiny applications.

Author: Charlotte Soneson [aut, cre] ORCID: 0000-0003-3833-2169 , Avi Srivastava [aut], Rob Patro [aut], Dongze He [aut]

Maintainer: Charlotte Soneson <charlottesoneson at gmail.com>

Citation (from within R, enter citation("alevinQC")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("alevinQC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("alevinQC")
Details biocViews QualityControl, SingleCell, Software Version 1.24.0 In Bioconductor since BioC 3.9 (R-3.6) (6 years) License MIT + file LICENSE Depends R (>= 4.0) Imports rmarkdown (>= 2.5), tools, methods, ggplot2 (>= 3.4.0), GGally, dplyr, rjson, shiny, shinydashboard, DT, stats, utils, tximport(>= 1.17.4), cowplot, rlang, Rcpp System Requirements C++11 URL https://github.com/csoneson/alevinQC Bug Reports https://github.com/csoneson/alevinQC/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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