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Bioconductor - alabaster.base

alabaster.base

This is the released version of alabaster.base; for the devel version, see alabaster.base.

Save Bioconductor Objects to File

Bioconductor version: Release (3.21)

Save Bioconductor data structures into file artifacts, and load them back into memory. This is a more robust and portable alternative to serialization of such objects into RDS files. Each artifact is associated with metadata for further interpretation; downstream applications can enrich this metadata with context-specific properties.

Author: Aaron Lun [aut, cre]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("alabaster.base")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("alabaster.base")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("alabaster.base")
Details biocViews DataImport, DataRepresentation, Software Version 1.8.0 In Bioconductor since BioC 3.17 (R-4.3) (2 years) License MIT + file LICENSE Depends Imports alabaster.schemas, methods, utils, S4Vectors, rhdf5(>= 2.47.6), jsonlite, jsonvalidate, Rcpp System Requirements C++17, GNU make URL https://github.com/ArtifactDB/alabaster.base Bug Reports https://github.com/ArtifactDB/alabaster.base/issues See More Suggests BiocStyle, rmarkdown, knitr, testthat, digest, Matrix, alabaster.matrix Linking To Rcpp, assorthead(>= 1.1.2), Rhdf5lib Enhances Depends On Me alabaster, alabaster.bumpy, alabaster.mae, alabaster.matrix, alabaster.ranges, alabaster.sce, alabaster.se, alabaster.sfe, alabaster.spatial, alabaster.string, alabaster.vcf Imports Me chevreulShiny, celldex, scRNAseq Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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