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Bioconductor - Trendy

Trendy

This is the released version of Trendy; for the devel version, see Trendy.

Breakpoint analysis of time-course expression data

Bioconductor version: Release (3.21)

Trendy implements segmented (or breakpoint) regression models to estimate breakpoints which represent changes in expression for each feature/gene in high throughput data with ordered conditions.

Author: Rhonda Bacher and Ning Leng

Maintainer: Rhonda Bacher <rbacher at ufl.edu>

Citation (from within R, enter citation("Trendy")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Trendy")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Trendy")
Details biocViews ImmunoOncology, RNASeq, Regression, Software, TimeCourse Version 1.30.0 In Bioconductor since BioC 3.7 (R-3.5) (7 years) License GPL-3 Depends R (>= 3.4) Imports stats, utils, graphics, grDevices, segmented, gplots, parallel, magrittr, BiocParallel, DT, S4Vectors, SummarizedExperiment, methods, shiny, shinyFiles System Requirements URL https://github.com/rhondabacher/Trendy See More Package Archives

Follow Installation instructions to use this package in your R session.

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