This is the released version of TOP; for the devel version, see TOP.
TOP Constructs Transferable Model Across Gene Expression PlatformsBioconductor version: Release (3.21)
TOP constructs a transferable model across gene expression platforms for prospective experiments. Such a transferable model can be trained to make predictions on independent validation data with an accuracy that is similar to a re-substituted model. The TOP procedure also has the flexibility to be adapted to suit the most common clinical response variables, including linear response, binomial and Cox PH models.
Author: Harry Robertson [aut, cre] ORCID: 0000-0001-9203-3894 , Nicholas Robertson [aut]
Maintainer: Harry Robertson <harry.robertson at sydney.edu.au>
Citation (from within R, entercitation("TOP")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TOP")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TOP")Follow Installation instructions to use this package in your R session.
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