This is the released version of TEKRABber; for the devel version, see TEKRABber.
An R package estimates the correlations of orthologs and transposable elements between two speciesBioconductor version: Release (3.21)
TEKRABber is made to provide a user-friendly pipeline for comparing orthologs and transposable elements (TEs) between two species. It considers the orthology confidence between two species from BioMart to normalize expression counts and detect differentially expressed orthologs/TEs. Then it provides one to one correlation analysis for desired orthologs and TEs. There is also an app function to have a first insight on the result. Users can prepare orthologs/TEs RNA-seq expression data by their own preference to run TEKRABber following the data structure mentioned in the vignettes.
Author: Yao-Chung Chen [aut, cre] ORCID: 0000-0002-9927-9130 , Katja Nowick [aut] ORCID: 0000-0003-3993-4479
Maintainer: Yao-Chung Chen <yao-chung.chen at fu-berlin.de>
Citation (from within R, entercitation("TEKRABber")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TEKRABber")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TEKRABber")Follow Installation instructions to use this package in your R session.
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