This is the released version of SeqGate; for the devel version, see SeqGate.
Filtering of Lowly Expressed FeaturesBioconductor version: Release (3.21)
Filtering of lowly expressed features (e.g. genes) is a common step before performing statistical analysis, but an arbitrary threshold is generally chosen. SeqGate implements a method that rationalize this step by the analysis of the distibution of counts in replicate samples. The gate is the threshold above which sequenced features can be considered as confidently quantified.
Author: Christelle Reynès [aut], Stéphanie Rialle [aut, cre]
Maintainer: Stéphanie Rialle <stephanie.rialle at mgx.cnrs.fr>
Citation (from within R, entercitation("SeqGate")
): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SeqGate")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SeqGate")
Details See More Package Archives
Follow Installation instructions to use this package in your R session.
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