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Bioconductor - SC3

SC3

This is the released version of SC3; for the devel version, see SC3.

Single-Cell Consensus Clustering

Bioconductor version: Release (3.21)

A tool for unsupervised clustering and analysis of single cell RNA-Seq data.

Author: Vladimir Kiselev

Maintainer: Vladimir Kiselev <vladimir.yu.kiselev at gmail.com>

Citation (from within R, enter citation("SC3")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SC3")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SC3")
Details biocViews Classification, Clustering, DataRepresentation, DifferentialExpression, DimensionReduction, GUI, ImmunoOncology, RNASeq, SingleCell, Software, SupportVectorMachine, Transcription, Transcriptomics, Visualization Version 1.36.0 In Bioconductor since BioC 3.3 (R-3.3) (9 years) License GPL-3 Depends R (>= 3.3) Imports graphics, stats, utils, methods, e1071, parallel, foreach, doParallel, doRNG, shiny, ggplot2, pheatmap (>= 1.0.8), ROCR, robustbase, rrcov, cluster, WriteXLS, Rcpp (>= 0.11.1), SummarizedExperiment, SingleCellExperiment, BiocGenerics, S4Vectors System Requirements URL https://github.com/hemberg-lab/SC3 Bug Reports https://support.bioconductor.org/t/sc3/ See More Package Archives

Follow Installation instructions to use this package in your R session.

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