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Bioconductor - Rmagpie

Rmagpie

This is the released version of Rmagpie; for the devel version, see Rmagpie.

MicroArray Gene-expression-based Program In Error rate estimation

Bioconductor version: Release (3.21)

Microarray Classification is designed for both biologists and statisticians. It offers the ability to train a classifier on a labelled microarray dataset and to then use that classifier to predict the class of new observations. A range of modern classifiers are available, including support vector machines (SVMs), nearest shrunken centroids (NSCs)... Advanced methods are provided to estimate the predictive error rate and to report the subset of genes which appear essential in discriminating between classes.

Author: Camille Maumet <Rmagpie at gmail.com>, with contributions from C. Ambroise J. Zhu

Maintainer: Camille Maumet <Rmagpie at gmail.com>

Citation (from within R, enter citation("Rmagpie")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Rmagpie")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rmagpie")

Details biocViews Classification, Microarray, Software Version 1.64.0 In Bioconductor since BioC 2.4 (R-2.9) (16 years) License GPL (>= 3) Depends R (>= 2.6.1), Biobase(>= 2.5.5) Imports Biobase(>= 2.5.5), e1071, graphics, grDevices, kernlab, methods, pamr, stats, utils System Requirements URL http://www.bioconductor.org/ See More Suggests xtable Linking To Enhances Depends On Me Imports Me Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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